Engineering and company structure

Development of the Talamus bioreactor systems is carried out as a joint project of Pikolab Engineering and Pikolab R&D. At Pikolab, our work on bioreactor control systems goes back to the BioSIS recording and control system we introduced in 2013. The recording and control unit of Talamus laboratory systems is based on the BioSIS architecture.

Pikolab Engineering and Pikolab R&D

System design, manufacturing and service, İzmir

Pikolab Engineering

At Pikolab Engineering, we have worked in process instrumentation and process analytical technology (PAT) since 2011. For Talamus systems, we carry out process engineering, mechanical design, fabrication, instrumentation integration, commissioning, sales and service.

info@pikolab.compat.pikolab.com
Process control, process analytics and decision support software, Manisa

Pikolab R&D

At Pikolab R&D, we develop process control, process analytics, automation and decision support software. The company was founded at Manisa Technopark in 2025, based on the field experience of Pikolab Engineering. We are responsible for developing the control and data layer of Talamus systems and the QorSense technology.

arge@pikolab.comarge.pikolab.com

Project process

  1. 01

    Requirements analysis

    We define the organism, product, target output, batch time and site utilities (steam, compressed air, cooling water, water, power, layout) together with you.

    Output User requirements specification (URS)

  2. 02

    Process design and P&ID

    We size the seed train, vessel volume, heat transfer, gas supply and agitation and prepare the Piping and Instrumentation Diagram (P&ID). We define phases, control loops, permissives, interlocks and the alarm approach in the Control Philosophy document.

    Output P&ID, layout, instrument list, Control Philosophy

  3. 03

    Fabrication

    Product-contact surfaces are made from certified AISI 316L. We document design pressure, test method and acceptance criteria for vessel and jacket to the applicable project standard. We prepare the panel, software and instrumentation in parallel with fabrication.

    Output Material certificates and test records

  4. 04

    Factory Acceptance Test (FAT)

    We run the system in the workshop before shipment and check valve sequences, phase transitions, alarms and sensor readings. Scope, acceptance criteria and customer attendance are defined in the contract.

  5. 05

    Installation and Site Acceptance Test (SAT)

    We make the plant connections and calibrate the sensors. Within the Site Acceptance Test (SAT), we check plant connections, I/O, phases and alarms and carry out water runs. Where qualification is required, we define the design, installation and operational qualification (DQ/IQ/OQ) documents separately.

  6. 06

    Training

    We prepare training content separately for operators, maintenance staff and process owners. It covers phase operation, set point management, calibration, alarm handling and basic troubleshooting.

  7. 07

    Service

    We provide planned maintenance, sensor recalibration and field support through our teams in İzmir and Manisa.

Evaluation criteria for system selection

TopicEvaluation criterionOn Talamus
Starting pointDesign inputsOrganism, target product and plant utilities
ScaleControl and data architecture at pilot and production scaleShared software and data architecture from laboratory scale up to 30,000 L; equipment and control settings defined per scale
Measurement chainResponsibility for sensor calibration and fault trackingWe select, install and recalibrate the sensors; sensor condition monitoring and maintenance prioritisation are performed with QorSense
Software and dataAccess to raw data without additional licencesProcess data exported via USB flash drive or Ethernet; local data storage option
Plant integrationDesign scope of steam, air and water connectionsWe design steam, air and water connections together with the layout in a project-specific P&ID
Change requestsNumber of counterparts for mechanical and software changesWe handle mechanical, automation and software changes under one project plan and responsibility matrix; Pikolab Engineering is the contractual counterpart
ServiceLocation of field serviceWe provide field service and technical support in Turkish through our teams in İzmir and Manisa
Cost structureComponents included in the packageModular design; we quote only the required components

Engineers and academic advisors

Technical team

  • Bioproduction and processBioprocessing and process analytical technologies since 2011
  • Mechanical engineeringStainless steel process equipment design and fabrication
  • Software developmentControl software and system architecture

Academic advisory board

  • BioengineeringEge University
  • Food engineeringİzmir Institute of Technology
  • PhysiologyManisa Celal Bayar University, İzmir University of Economics

Scientific studies run with Pikolab systems

Our Google Scholar profile lists 16 studies; most are microalgae and cyanobacteria research run with airlift and flat-panel photobioreactors. 5 publications name the BioSIS controller explicitly in their methods section.

Studies that name the BioSIS controller

The methods section of these publications states explicitly that culture conditions were measured and controlled with the Pikolab BioSIS controller.

  1. Şener N, Demirel Z, İmamoğlu E, Conk Dalay M (2022). Optimization of culture conditions for total carotenoid amount using response surface methodology in green microalgae Ankistrodesmus convolutus. Aquatic Sciences and Engineering 37(1): 29–37. doi:10.26650/ASE2020785091Flat-panel photobioreactor, 6 L; BioSIS controller
  2. Demirel Z, Imamoglu E, Conk Dalay M (2020). Growth kinetics of Nanofrustulum shiloi under different mixing conditions in flat-plate photobioreactor. Brazilian Archives of Biology and Technology 63: e20190201. doi:10.1590/1678-4324-2020190201Flat-panel photobioreactor, 6 L working volume; BioSIS controller
  3. Deniz I, Demirel Z, Imamoglu E, Conk Dalay M (2019). Enhanced microalgal lipid production in internally illuminated airlift photobioreactor. Marine Technology Society Journal 53(2): 38–45. doi:10.4031/MTSJ.53.2.4Internally illuminated airlift photobioreactor, 1.8 L; BioSIS controller
  4. Khazi MI, Demirel Z, Conk Dalay M (2018). Enhancement of biomass and phycocyanin content of Spirulina platensis. Frontiers in Bioscience (Elite) 10: 276–286. doi:10.2741/e822Photobioreactor; Pikolab controller, temperature-DO and pH probes
  5. Demirel Z, Imamoglu E, Conk Dalay M (2017). Screening of fatty acid composition in Nitzschia sp.. Turkish Journal of Biochemistry 42(3): 273–277. doi:10.1515/tjb-2016-0294BioSIS controller; combined temperature-DO probe and pH probe

Photobioreactor and cultivation studies

Studies listed on the Pikolab Engineering Google Scholar profile, run by the same research group with airlift and flat-panel photobioreactors. The equipment used is stated in the methods section of each publication.

  1. Alpural A, Dincoglu B, Demirel Z, Imamoglu E (2025). Effect of nitrogen on lipid production of Chlorococcum novae-angliae. Systems Microbiology and Biomanufacturing 5(1): 215–222. doi:10.1007/s43393-024-00310-7Microalgae cultivation; nitrogen limitation
  2. Tepe U, Aslanbay Guler B, Demirel Z, Imamoglu E (2025). Effect of light intensities in triple co-culture. Sustainable Landscape Planning and Natural Resources Management, Springer: 149–154. doi:10.1007/978-3-031-81288-0_16Triple co-culture; light intensity
  3. Khazi MI, Demirel Z, Liaqat F, Eltem R, Conk Dalay M (2024). Development of an efficient process to extract C-phycocyanin from marine cyanobacterial strains and evaluation of its bioactive potential. Journal of Chemical Technology & Biotechnology 99(8): 1897–1906. doi:10.1002/jctb.7693Cyanobacteria cultivation; phycocyanin extraction
  4. Aslanbay Guler B, Deniz I, Demirel Z, Imamoglu E (2020). Computational fluid dynamics simulation in scaling-up of airlift photobioreactor for astaxanthin production. Journal of Bioscience and Bioengineering 129(1): 86–92. doi:10.1016/j.jbiosc.2019.06.010Airlift photobioreactor; scale-up and CFD
  5. Aslanbay Guler B, Deniz I, Demirel Z, Imamoglu E (2020). Evaluation of scale-up methodologies and computational fluid dynamics simulation for fucoxanthin production in airlift photobioreactor. Asia-Pacific Journal of Chemical Engineering 15(6): e2532. doi:10.1002/apj.2532Airlift photobioreactor, scale-up from 1 L to 2 L; CFD
  6. Çalışkan G (2020). Mikroalglerden biyojenik nanopartiküllerin sentezlenmesi ve kullanım potansiyelinin araştırılması. Doktora tezi, Ege Üniversitesi Fen Bilimleri Enstitüsü, İzmir.Microalgae cultivation
  7. Aslanbay Guler B, Deniz I, Demirel Z, Oncel SS, Imamoglu E (2019). Comparison of different photobioreactor configurations and empirical computational fluid dynamics simulation for fucoxanthin production. Algal Research 37: 195–204. doi:10.1016/j.algal.2018.11.019Different photobioreactor configurations; CFD
  8. Aslanbay Guler B, Deniz I, Demirel Z, Oncel SS, Imamoglu E (2019). Transition from start-up to scale-up for fucoxanthin production in flat plate photobioreactor. Journal of Applied Phycology 31(3): 1525–1533. doi:10.1007/s10811-018-1696-7Flat-panel photobioreactor; scale-up
  9. Demirel Z, Tok R, İlter I, Akyıl S, Erdoğan A, Koç M, Ertekin FK, Conk Dalay M (2018). Biyokütle için mikroalg ve siyanobakterinin büyük ölçekli üretimi. Aquatic Research 1(2): 64–76. doi:10.3153/AR18008Review; large-scale production systems
  10. Demirel Z, Imamoglu E, Conk Dalay M (2015). Fatty acid profile and lipid content of Cylindrotheca closterium cultivated in air-lift photobioreactor. Journal of Chemical Technology & Biotechnology 90(12): 2290–2296. doi:10.1002/jctb.4687Laboratory-scale internal-loop airlift photobioreactor

Other process studies

  1. Andak B, Özduğan E, Türdü S, Bulutcu AN (2019). Recovery of zinc and manganese from spent zinc-carbon and alkaline battery mixtures via selective leaching and crystallization processes. Journal of Environmental Chemical Engineering 7(5): 103372. doi:10.1016/j.jece.2019.103372Hydrometallurgical recovery process
Google Scholar profile

Project plan consultation

Information on the project schedule, battery limits and FAT, SAT or qualification expectations is sufficient for an initial assessment.